They'll count everything that makes up your undergraduate gpa. But the easiest way to find out is to upload your transfers to LSAC. LSAC will calculate your gpa. This is the gpa the schools will look at.
To give a better picture of where I'm at... my avg score over the past 11 PTs that I've taken since my class ended Sept 12 has been a 163 (this is timed LR, timed RC, untimed LG bc I'm still foolproofing)... I want to score a 170.